PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_65414_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 117aa    MW: 13330.1 Da    PI: 10.5776
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_65414_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.6e-19756255
                                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                                         +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + g
  cra_locus_65414_iso_1_len_441_ver_3  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMCG 56
                                         69******9.**********8.....334**********************97765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.02E-31663No hitNo description
SMARTSM003804.9E-40770IPR001471AP2/ERF domain
PfamPF008477.9E-12756IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-21765IPR016177DNA-binding domain
PROSITE profilePS5103220.719764IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-34764IPR001471AP2/ERF domain
PRINTSPR003671.6E-11819IPR001471AP2/ERF domain
PRINTSPR003671.6E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MARPEQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR  60
TNFSYDANES SPPSATKFLS ATLIAKLQRC HVTSLKMAKR PHGTNKDSED AVAQKFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-17870669ATERF1
3gcc_A6e-17870669ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771954.11e-58PREDICTED: ethylene-responsive transcription factor ERF003-like
RefseqXP_016462615.11e-58PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW54e-53ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A068TQD82e-59A0A068TQD8_COFCA; Uncharacterized protein
STRINGSolyc06g068360.2.12e-54(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476